CNVScope

A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization

v3.7.2 · Mar 30, 2022 · BSD_3_clause + file LICENSE

Description

Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.

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r-devel-linux-x86_64-debian-clang	NOTE	713.7s
r-devel-linux-x86_64-debian-gcc	NOTE	551.3s
r-devel-linux-x86_64-fedora-clang	NOTE	1291.1s
r-devel-linux-x86_64-fedora-gcc	NOTE	1219.6s
r-devel-windows-x86_64	OK	657s
r-oldrel-macos-arm64	OK
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r-oldrel-windows-x86_64	ERROR	34s
r-patched-linux-x86_64	OK	685.4s
r-release-linux-x86_64	OK
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r-release-windows-x86_64	OK	666s

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               person(given = "Jack",
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                      role = "cre",
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ERROR r-oldrel-windows-x86_64

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ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 29, 2026

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               person(given = "James",
                      family = "Dalgleish",
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NOTE r-devel-linux-x86_64-debian-gcc

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Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

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                      family = "Dalgleish",
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as necessary.

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dependencies in R code

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ERROR r-oldrel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/CNVScope.Rcheck/00install.out' for details.

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 27, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

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  Authors@R: c(person(given = "James",
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                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "James",
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...[truncated]...
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               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

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NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

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ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 21, 2026

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CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

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  Authors@R: c(person(given = "James",
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...[truncated]...
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                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
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NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR r-release-linux-x86_64

package dependencies

Packages required but not available: 'GenomicInteractions', 'biomaRt'

Packages suggested but not available for checking:
  'HiCseg', 'GenomicFeatures'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
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  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
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NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
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ERROR 9 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

ERROR r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 7, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 6, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR r-oldrel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/CNVScope.Rcheck/00install.out' for details.

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 4, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 26, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR r-oldrel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/CNVScope.Rcheck/00install.out' for details.

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR r-release-linux-x86_64

package dependencies

Packages required but not available: 'GenomicInteractions', 'rtracklayer'

Packages suggested but not available for checking:
  'HiCseg', 'InteractionSet', 'GenomicFeatures',
  'BSgenome.Hsapiens.UCSC.hg19'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE 7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 16, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

ERROR 6 OK · 7 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

ERROR r-patched-linux-x86_64

package dependencies

Package required but not available: ‘GenomicInteractions’

Packages suggested but not available for checking:
  'HiCseg', 'GenomicFeatures'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

NOTE 7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘James Dalgleish <james.dalgleish@nih.gov>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "James",
                      family = "Dalgeish",
                      role = "aut"),
             
...[truncated]...
   family = "Meltzer",
                      role = "aut"),
               person(given = "James",
                      family = "Dalgleish",
                      role = "cre",
                      email = "james.dalgleish@nih.gov"))
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-devel-linux-x86_64-fedora-gcc

dependencies in R code

Namespace in Imports field not imported from: 'Hmisc'
  All declared Imports should be used.

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-macos-x86_64

package dependencies

Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg19’

NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.2Mb
  sub-directories of 1Mb or more:
    doc       3.2Mb
    extdata   1.7Mb

Dependency Network

Version History

19 tracked

new 3.7.2 Mar 10, 2026

updated 3.7.2 ← 3.6.0 diff Mar 30, 2022

updated 3.6.0 ← 3.5.6 diff May 23, 2021

updated 3.5.6 ← 3.3.9 diff Jan 10, 2021

updated 3.3.9 ← 3.3.7 diff Dec 14, 2020

updated 3.3.7 ← 3.1.8 diff Nov 28, 2020

updated 3.1.8 ← 3.0.9 diff Jul 2, 2020

updated 3.0.9 ← 3.0.8 diff Apr 28, 2020

updated 3.0.8 ← 3.0.6 diff Apr 27, 2020

updated 3.0.6 ← 3.0.5 diff Apr 26, 2020

updated 3.0.5 ← 2.9.4 diff Apr 21, 2020

updated 2.9.4 ← 2.9.2 diff Dec 6, 2019

updated 2.9.2 ← 2.8.2 diff Dec 4, 2019

updated 2.8.2 ← 2.8.1 diff Oct 24, 2019

updated 2.8.1 ← 2.7.7 diff Oct 23, 2019