chevreulProcess
Bioc currentTools for managing SingleCellExperiment objects as projects
Release Lineage
Entered 3.21 · Apr 16, 2025
Current · Requires R 4.6
Description
Tools for analyzing SingleCellExperiment objects as projects. for input into the chevreulShiny app downstream. Includes functions for analysis of single cell RNA sequencing data. Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
52 22 exported
Complexity
2.1 avg / 10 max
Call network
52 nodes / 29 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,275
Files
116
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
22
Internal functions
25
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.06
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2025-04-15
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 54 (1 internal)includes a package overview page
- Examples that run
- 95%20 run in a plain check · 1 hold no code
- Exported functions with examples
- 82%
- Documented parameters
- 99%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Preprocessing HTML
Repository practices
10 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/whtns/chevreulprocess on 2026-10-22.
GitHub Pages site last deployed 2025-06-05 · The repository has a site deploy workflow
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| cc.genes.cyclone | list | 3 elements | 3 packages |
| ensembl_version | vector | 1 element | 3 packages |
| grch38 | tibble | 76,062 × 9 | 3 packages |
| grch38_tx2gene | tibble | 277,081 × 2 | 3 packages |
| human_to_mouse_homologs | data.frame | 23,188 × 2 | 3 packages |
| small_example_dataset | – | – | – |
| tiny_sce | – | – | – |
Topics
Depended on by (3)
Bioconductor (3)
People
- Kevin Stachelek author maintainer
- Bhavana Bhat author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("chevreulProcess")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.