txdbmaker
Bioc currentTools for making TxDb objects from genomic annotations
v1.8.0
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software
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Artistic-2.0
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
1.0
In 5 of 49 releases
3.23
Description
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files). These tools allow the user to download the genomic locations of transcripts, exons, and CDS, for a given assembly, and to import them in a TxDb object. TxDb objects are implemented in the GenomicFeatures package, together with flexible methods for extracting the desired features in convenient formats.
Code
Code metrics have not been computed for this package yet.
Topics
Depended on by (62)
Bioconductor (61)
AnnotationHub APAlyzer ASpli BgeeCall BindingSiteFinder Bioc.gff bumphunter BUSpaRse casper crisprDesign crisprViz customProDB DegNorm DEXSeq DOTSeq doubletrouble eisaR ELViS EpiTxDb EventPointer FRASER GenomicFeatures GenomicPlot GenomicRanges IntEREst metaseqR2 mygene ORFik OrganismDbi OUTRIDER +31 more
CRAN (1)
People
- H. Pagès author maintainer
- P. Aboyoun author
- M. Carlson author
- R. Castelo contributor
- S. Falcon author
- M. Lawrence contributor
- I-Hsuan Lin contributor
- J. MacDonald contributor
- M. Morgan author
- M. Ramos contributor
- S. Saini contributor
- L. Shepherd contributor