ComplexHeatmap
Bioc currentMake Complex Heatmaps
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
330 178 exported
Complexity
9.2 avg / 220 max
Call network
330 nodes / 615 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
41,729
Files
334
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
178
Internal functions
146
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.13
testthat edition
–
Docs
Roxygen coverage
99.4%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
8.3%
Unsafe pattern score
0
Dep constraint coverage
11.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
20
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 253includes a package overview page
- Examples that run
- 99%251 run in a plain check (1 of them under a condition) · 2 never run
- Exported functions with examples
- 100%
- Documented parameters
- 92%
- Return-value docs
- 46%
- Help pages citing references
- 0%
Repository practices
6 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/jokergoo/complexheatmap on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-04-02
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| anno | data.frame | 20 × 5 | No other package |
| anno_col | list | 3 elements | No other package |
| anno_gene | vector | 1,000 elements | No other package |
| anno_states | data.frame | 1,000 × 3 | No other package |
| cor_pvalue | vector | 1,000 elements | No other package |
| direction | vector | 1,000 elements | No other package |
| dmr_summary | list | 10 elements | No other package |
| gene_expression | data.frame | 155 × 27 | 2 packages |
| gene_type | vector | 1,000 elements | No other package |
| gr | data.frame | 2,415 × 29 | No other package |
| mat_expr | matrix | 1,000 × 20 | No other package |
| mat_meth | matrix | 1,000 × 20 | No other package |
| measles | matrix | 59 × 72 | 3 packages |
| meth | list | 8 elements | No other package |
| rand_mat | matrix | 18 × 24 | No other package |
| sample_order | data.frame | 171 × 1 | No other package |
| tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling | matrix | 26 × 172 | No other package |
| tss_dist | vector | 1,000 elements | No other package |
Topics
Depended on by (158)
Show 90 packagesHide 90 packages
Bioconductor (127)
CRAN (31)
Suggested by (73)
People
- Zuguang Gu author maintainer
Cite
Cite this package
Run in R for the authors' entry:
citation("ComplexHeatmap")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btw313, 10.1002/imt2.43.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.