ClustAll
Bioc currentClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
25 0 exported
Complexity
3.3 avg / 12 max
Call network
25 nodes / 6 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,867
Files
58
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
18
Internal functions
25
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-09-20
Latest release
2026-04-28
Avg cadence
175 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Asier Ortega-Legarreta author maintainer
- Sara Palomino-Echeverria author