projectR
Bioc currentFunctions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
22 12 exported
Complexity
6.4 avg / 21 max
Call network
22 nodes / 5 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,801
Files
77
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
16
Internal functions
10
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
GPL (==2)
License flags
not SPDX, not OSI
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
17
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 36
- Examples that run
- 91%10 run in a plain check · 1 never run
- Exported functions with examples
- 69%
- Documented parameters
- 100%
- Return-value docs
- 88%
- Help pages citing references
- 11%
- projectR HTML
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/genesofeve/projectr on 2026-10-11.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| AP.RNAseq6l3c3t | list | 12 elements | No other package |
| CR.RNAseq6l3c3t | – | – | – |
| cr_microglial | – | – | – |
| glial_counts | dgTMatrix | 2,996 × 5,183 | No other package |
| map.ESepiGen4c1l | data.frame | 93 × 9 | No other package |
| map.RNAseq6l3c3t | data.frame | 108 × 6 | No other package |
| microglial_counts | dgTMatrix | 2,996 × 415 | No other package |
| multivariateAnalysisR_seurat_test | – | – | – |
| p.ESepiGen4c1l | list | 6 elements | No other package |
| p.RNAseq6l3c3t | data.frame | 108 × 54 | No other package |
| pd.ESepiGen4c1l | data.frame | 9 × 2 | No other package |
| pd.RNAseq6l3c3t | data.frame | 54 × 38 | No other package |
| retinal_patterns | data.frame | 3,290 × 80 | No other package |
Topics
Depended on by (1)
Bioconductor (1)
People
- Genevieve Stein-O'Brien author maintainer
- Loyal Goff author
- Ryan Palaganas author
- Gaurav Sharma author
- Charles Shin author
- Jared Slosberg author
Cite
Cite this package
Run in R for the authors' entry:
citation("projectR")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.