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gr

Bundled with ComplexHeatmap · provided in inst/extdata, read by path with system.file()

Class
data.frame
Dimensions
2,415 × 29
Missing
0
Format
rds · gzip
version 2 · 402 KB
File
inst/extdata/gr.rds
Fingerprint
49bb3b00
About this object
A table with named columnsA bordered table: a header band ruled off from the body with an empty slot over each column where its name goes, and rows of cells under it that share every edge. Nothing is in any of them.

Equal-length columns presented as a table, R's standard rectangular format. R object catalogue

Declared attributes
Row names
Yes
Columns
Column
Type
Distinct
Missing
Summary
meth_s1
numeric
2,415
0
0.0024 – 0.9884mean 0.7084
Min.
0.0024
1st Qu.
0.5935
Median
0.7251
Mean
0.7084
3rd Qu.
0.8445
Max.
0.9884
Std. dev
0.1693
Skewness
-0.5114
Kurtosis
-0.1799
Outliers
88 low · 0 high
meth_s2
numeric
2,415
0
0.0533 – 0.9897mean 0.6917
Min.
0.0533
1st Qu.
0.5908
Median
0.7079
Mean
0.6917
3rd Qu.
0.8118
Max.
0.9897
Std. dev
0.1548
Skewness
-0.5758
Kurtosis
0.0925
Outliers
2525 low · 0 high
meth_s3
numeric
2,415
0
0.0509 – 0.9976mean 0.6974
Min.
0.0509
1st Qu.
0.5745
Median
0.7183
Mean
0.6974
3rd Qu.
0.8481
Max.
0.9976
Std. dev
0.1869
Skewness
-0.506
Kurtosis
-0.3378
Outliers
88 low · 0 high
meth_s4
numeric
2,415
0
0.0211 – 0.9999mean 0.6949
Min.
0.0211
1st Qu.
0.5642
Median
0.717
Mean
0.6949
3rd Qu.
0.8529
Max.
0.9999
Std. dev
0.1917
Skewness
-0.5329
Kurtosis
-0.3789
Outliers
66 low · 0 high
meth_s5
numeric
2,415
0
0.033 – 0.9993mean 0.6987
Min.
0.033
1st Qu.
0.574
Median
0.7171
Mean
0.6987
3rd Qu.
0.8496
Max.
0.9993
Std. dev
0.1854
Skewness
-0.4631
Kurtosis
-0.4572
Outliers
77 low · 0 high
meth_s6
numeric
2,415
0
0.0006 – 0.9917mean 0.6836
Min.
0.0006
1st Qu.
0.5532
Median
0.7143
Mean
0.6836
3rd Qu.
0.84
Max.
0.9917
Std. dev
0.1931
Skewness
-0.5831
Kurtosis
-0.4161
Outliers
55 low · 0 high
meth_s7
numeric
2,415
0
0.0345 – 0.9874mean 0.6706
Min.
0.0345
1st Qu.
0.5391
Median
0.7053
Mean
0.6706
3rd Qu.
0.8332
Max.
0.9874
Std. dev
0.1987
Skewness
-0.5974
Kurtosis
-0.3971
Outliers
55 low · 0 high
meth_s8
numeric
2,415
0
0.0014 – 1mean 0.6342
Min.
0.0014
1st Qu.
0.4849
Median
0.663
Mean
0.6342
3rd Qu.
0.8158
Max.
1
Std. dev
0.2228
Skewness
-0.4622
Kurtosis
-0.6123
meth_s9
numeric
2,415
0
0.0127 – 0.9988mean 0.6547
Min.
0.0127
1st Qu.
0.5167
Median
0.6837
Mean
0.6547
3rd Qu.
0.8246
Max.
0.9988
Std. dev
0.2124
Skewness
-0.5399
Kurtosis
-0.4588
Outliers
44 low · 0 high
meth_s10
numeric
2,415
0
0.0107 – 0.9984mean 0.6708
Min.
0.0107
1st Qu.
0.5429
Median
0.6915
Mean
0.6708
3rd Qu.
0.831
Max.
0.9984
Std. dev
0.1992
Skewness
-0.5037
Kurtosis
-0.4185
Outliers
66 low · 0 high
meth_s11
numeric
2,415
0
0.0784 – 0.9996mean 0.6637
Min.
0.0784
1st Qu.
0.5263
Median
0.693
Mean
0.6637
3rd Qu.
0.8226
Max.
0.9996
Std. dev
0.2002
Skewness
-0.4796
Kurtosis
-0.6016
Outliers
11 low · 0 high
meth_s12
numeric
2,415
0
0.0337 – 0.9984mean 0.667
Min.
0.0337
1st Qu.
0.5275
Median
0.6982
Mean
0.667
3rd Qu.
0.8241
Max.
0.9984
Std. dev
0.2009
Skewness
-0.5342
Kurtosis
-0.5154
Outliers
22 low · 0 high
expr_s1
numeric
1,698
0
-6.0382 – 5.9837mean -0.4645
Min.
-6.0382
1st Qu.
-1.5296
Median
-0.5112
Mean
-0.4645
3rd Qu.
0.5613
Max.
5.9837
Std. dev
1.5424
Skewness
0.2175
Kurtosis
0.6264
Outliers
222 low · 20 high
expr_s2
numeric
1,698
0
-8.5163 – 7.8218mean -0.0897
Min.
-8.5163
1st Qu.
-1.3287
Median
-0.1455
Mean
-0.0897
3rd Qu.
1.1385
Max.
7.8218
Std. dev
1.8518
Skewness
0.0195
Kurtosis
1.066
Outliers
4328 low · 15 high
expr_s3
numeric
1,698
0
-7.3308 – 6.3371mean -0.1942
Min.
-7.3308
1st Qu.
-1.165
Median
-0.1337
Mean
-0.1942
3rd Qu.
0.8564
Max.
6.3371
Std. dev
1.5224
Skewness
-0.3341
Kurtosis
1.085
Outliers
4229 low · 13 high
expr_s4
numeric
1,698
0
-7.8437 – 7.4368mean -0.3731
Min.
-7.8437
1st Qu.
-1.4742
Median
-0.4929
Mean
-0.3731
3rd Qu.
0.7799
Max.
7.4368
Std. dev
1.5906
Skewness
0.0455
Kurtosis
0.8786
Outliers
189 low · 9 high
expr_s5
numeric
1,698
0
-8.8574 – 13.4254mean 0.1072
Min.
-8.8574
1st Qu.
-1.1553
Median
0.1852
Mean
0.1072
3rd Qu.
1.3212
Max.
13.4254
Std. dev
1.9427
Skewness
0.0648
Kurtosis
1.6
Outliers
3818 low · 20 high
expr_s6
numeric
1,698
0
-7.1128 – 9.2089mean 0.2096
Min.
-7.1128
1st Qu.
-1.0839
Median
0.2476
Mean
0.2096
3rd Qu.
1.2579
Max.
9.2089
Std. dev
1.8165
Skewness
0.5042
Kurtosis
2.298
Outliers
5215 low · 37 high
expr_s7
numeric
1,698
0
-9.3177 – 8.2082mean -0.0695
Min.
-9.3177
1st Qu.
-1.3031
Median
0.0676
Mean
-0.0695
3rd Qu.
1.1286
Max.
8.2082
Std. dev
1.6326
Skewness
-0.1511
Kurtosis
0.3001
Outliers
52 low · 3 high
expr_s8
numeric
1,698
0
-12.3482 – 11.6855mean 0.154
Min.
-12.3482
1st Qu.
-1.27
Median
0.4958
Mean
0.154
3rd Qu.
1.6872
Max.
11.6855
Std. dev
2.3086
Skewness
-0.4825
Kurtosis
0.8148
Outliers
3226 low · 6 high
expr_s9
numeric
1,698
0
-5.9627 – 6.6307mean 0.5195
Min.
-5.9627
1st Qu.
-0.3157
Median
0.6092
Mean
0.5195
3rd Qu.
1.2726
Max.
6.6307
Std. dev
1.3219
Skewness
0.2219
Kurtosis
2.217
Outliers
6724 low · 43 high
expr_s10
numeric
1,698
0
-10.4777 – 11.0479mean -0.139
Min.
-10.4777
1st Qu.
-1.2484
Median
-0.1236
Mean
-0.139
3rd Qu.
0.9822
Max.
11.0479
Std. dev
1.746
Skewness
-0.052
Kurtosis
2.579
Outliers
3916 low · 23 high
expr_s11
numeric
1,698
0
-9.9362 – 9.528mean -0.1229
Min.
-9.9362
1st Qu.
-1.116
Median
0.0379
Mean
-0.1229
3rd Qu.
0.9867
Max.
9.528
Std. dev
1.5411
Skewness
-0.7483
Kurtosis
3.703
Outliers
4033 low · 7 high
expr_s12
numeric
1,698
0
-8.6791 – 4.7295mean 0.0398
Min.
-8.6791
1st Qu.
-0.846
Median
0.2767
Mean
0.0398
3rd Qu.
1.1317
Max.
4.7295
Std. dev
1.5884
Skewness
-1.082
Kurtosis
3.274
Outliers
6256 low · 6 high
cor_p
numeric
125
0
0.0038 – 3.7164·1 +Inf
Min.
0.0038
1st Qu.
0.1653
Median
0.4076
Mean
0.5761
3rd Qu.
0.8069
Max.
3.7164
Std. dev
0.5598
Skewness
1.686
Kurtosis
3.439
Outliers
1030 low · 103 high
+Inf
1
Infinities
left out of every figure above
direction
factor
2
0
hypo1,556hyper859
annotation
factor
3
0
Intergenic1,236intron1,094others85
weak_enhancer
numeric
141
0
0 – 1mean 0.0471
Min.
0
1st Qu.
0
Median
0
Mean
0.0471
3rd Qu.
0
Max.
1
Std. dev
0.1857
Skewness
4.181
Kurtosis
16.68
Zeros
2,228
strong_enhancer
numeric
95
0
0 – 1mean 0.0685
Min.
0
1st Qu.
0
Median
0
Mean
0.0685
3rd Qu.
0
Max.
1
Std. dev
0.24
Skewness
3.387
Kurtosis
9.778
Zeros
2,205
Version history
VersionReleasedSizeChangeStored asConfidence
3.232026-04-282,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.222026-01-302,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.212025-06-232,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.202024-10-292,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.192024-04-302,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.182023-10-242,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.172023-04-252,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.162022-11-012,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.152022-08-082,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.142021-10-262,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.132021-05-192,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.122020-11-122,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.112020-07-252,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.102019-10-292,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.92019-05-022,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.82018-10-302,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.72018-06-192,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.62018-04-102,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.52017-04-242,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.42016-10-172,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.32016-05-152,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.22015-10-132,415 × 29Unchangedrds · gzip
version 2 · 402 KB
exact
3.12015-04-162,415 × 29–rds · gzip
version 2 · 402 KB
exact

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