ogrdbstats
Analysis of Adaptive Immune Receptor Repertoire Germ Line Statistics
Description
Multiple tools are now available for inferring the personalised germ line set from an adaptive immune receptor repertoire. Output from these tools is converted to a single format and supplemented with rich data such as usage and characterisation of 'novel' germ line alleles. This data can be particularly useful when considering the validity of novel inferences. Use of the analysis provided is described in <doi:10.3389/fimmu.2019.00435>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Packages required but not available: 'tigger', 'alakazam' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
package dependencies
Packages required but not available: 'tigger', 'alakazam' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
ERROR 10 OK · 0 NOTE · 3 WARNING · 1 ERROR · 0 FAILURE Mar 23, 2026
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’
package dependencies
Package required but not available: ‘pwalign’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
WARNING 11 OK · 0 NOTE · 3 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’
dependencies in R code
Missing or unexported object: ‘Biostrings::pairwiseAlignment’