airpart
Bioc currentDifferential cell-type-specific allelic imbalance
Release Lineage
Entered 3.13 · May 20, 2021
Current · Requires R 4.6
Description
Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
27 17 exported
Complexity
3.2 avg / 11 max
Call network
27 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,068
Files
46
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
10
Testing & CI
Has tests
Yes
Test-to-code ratio
0.06
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
11
First release
2021-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 94%
- References docs
- 12%
Topics
People
- Wancen Mu author maintainer
- Michael Love author contributor