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coda4microbiome

Compositional Data Analysis for Microbiome Studies

v0.2.4 · Jul 17, 2024 · MIT + file LICENSE
CRAN GitHub Mirror

Description

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

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CRAN Check Status

14 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies corrplot glmnet plyr pROC ggpubr ggplot2 ComplexHeatmap circlize survival survminer coda4microbiome

Version History

new 0.2.4 Mar 10, 2026
updated 0.2.4 ← 0.2.3 diff Jul 16, 2024
updated 0.2.3 ← 0.2.2 diff Feb 20, 2024
updated 0.2.2 ← 0.2.1 diff Jan 25, 2024
updated 0.2.1 ← 0.1.4 diff Dec 20, 2023
updated 0.1.4 ← 0.1.3 diff Feb 8, 2023
updated 0.1.3 ← 0.1.2 diff Dec 18, 2022
updated 0.1.2 ← 0.1.1 diff Nov 6, 2022
updated 0.1.1 ← 0.1.0 diff Mar 30, 2022
new 0.1.0 Mar 16, 2022