R Observatory: Metrics for MKomics version 0.8

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MKomics

0.8Package record

Omics Data Analysis

0packages dependsuggested by 1

2.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Matthias KohlCRAN page ↗Website ↗

Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), doi:10.1093/nar/gkv007 ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).

Install

R (CRAN)Ubuntu (r2u)

install.packages("MKomics", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mkomics

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-05-14

Show 2 earlier changesHide 2 earlier changes

ERROR11 OK, 2 ERROR2026-04-30
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structuredCitation fileYes · computed when R runs itWebsiteYes

Help pages: 18includes a package overview page
Examples that run: 100%17 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 94%

Vignettes (1)

MKomics

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #18,442 · ~7/day · ~227/mo

Releases R versions

Daily download trend is not available in this view yet.

24330 days

71090 days

2.7K1 year

Compare downloads with other packages →

Also on75 r2u

How downloads are counted

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing MKomics adds 7 packages (2 with compiled code, 7.6 MB of source tarballs). Heaviest: circlize 2.4 MB, robustbase 2.2 MB, colorspace 2.0 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 4.0.0

Imports (10)

statsutilsgraphicsgrDevicesRColorBrewer robustbase limmagridcirclize ComplexHeatmap

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

RFLPtools

How these are counted

Code & Tests

People & History

People (1)

Matthias Kohl

Author, Maintainer since 0.5 (2020)

Releases (3)

Pick two releases to compare their code metrics.

0.8Latest
record
2026-05-07 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.7
record
2021-08-08 · diff ↗ ·
added 3 exports
corPlot2, madPlot2, simPlot2
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.5
record
2020-02-19
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-02-19
Total releases: 3 / 6 yrs
License: LGPL-3 OSI
Minimum R: ≥ 4.0.0
Download size: 365 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MKomics")

The package provides a citation file that builds its entry when R runs it. Run citation() to see it.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MKomics version 0.8 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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