CRISPRball
Bioc currentShiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering
Release Lineage
Entered 3.19 · May 1, 2024
Current · Requires R 4.6
Description
A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
59 17 exported
Complexity
5.5 avg / 71 max
Call network
59 nodes / 67 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,651
Files
89
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
44
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2024-04-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 23 (1 internal)includes a package overview page
- Examples that run
- 94%16 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 97%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
5 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/j-andrews7/crisprball on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| beta_leukemia.gene_summary | data.frame | 1,000 × 14 | No other package |
| beta_leukemia.sgrna_summary | data.frame | 10,241 × 3 | No other package |
| depmap_22q1_TPM | tibble | 1,393 × 9 | No other package |
| depmap_22q1_cn | tibble | 1,754 × 9 | No other package |
| depmap_22q1_crispr | tibble | 1,070 × 9 | No other package |
| depmap_22q1_crispr_rnai | tibble | 1,782 × 10 | No other package |
| depmap_22q1_rnai | tibble | 712 × 9 | No other package |
| esc1.gene_summary | data.frame | 1,000 × 14 | No other package |
| esc1.sgrna_summary | data.frame | 4,596 × 15 | No other package |
| escneg.count_normalized | data.frame | 4,596 × 4 | No other package |
| escneg.countsummary | data.frame | 2 × 13 | No other package |
| leukemia.new_1000 | data.frame | 10,241 × 6 | No other package |
| plasmid.gene_summary | data.frame | 1,000 × 14 | No other package |
| plasmid.sgrna_summary | data.frame | 4,596 × 15 | No other package |
Topics
People
- Jared Andrews author maintainer
- Jacob Steele contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CRISPRball")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.