RaggedExperiment
Bioc currentRepresentation of Sparse Experiments and Assays Across Samples
Release Lineage
Entered 3.5 · Apr 25, 2017
Current · Requires R 4.6
Description
This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
23 9 exported
Complexity
3.4 avg / 15 max
Call network
23 nodes / 56 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,595
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
12
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.68
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
19
First release
2017-04-24
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (16)
People
- Marcel Ramos author maintainer
- Lydia King contributor
- Martin Morgan author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RaggedExperiment")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.