R Observatory: Metrics for AnVILGCP version 1.6.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

AnVILGCP

Bioc current

The GCP R Client for the AnVIL

v1.6.2 · software · Artistic-2.0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.20 · Oct 30, 2024

Current · Requires R 4.6

1.0 In 4 of 49 releases 3.23

Description

The package provides a set of functions to interact with the Google Cloud Platform (GCP) services on the AnVIL platform. The package is designed to use the API calls from the AnVIL package. It coordinates AnVIL workspace functionality with native GCP tools.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

83 45 exported

Complexity

2 avg / 12 max

Call network

83 nodes / 49 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

7,030

Files

42

Compiled share

0%

Has compiled src

No

Language breakdown

R 4,356 (62%)Tests 140 (2%)Docs 2,038 (29%)Vignettes 496 (7.1%)

API

Exported functions

45

Internal functions

7

Recent export changes

v3.23−1 gcloud_exists

v3.22+1 drs_nci_crdc

Testing & CI

Has tests

Yes

Test-to-code ratio

0.03

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

100%

Unsafe pattern score

0

Dep constraint coverage

8.3%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.5.0

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

4

First release

2024-10-29

Latest release

2026-05-26

Avg cadence

193 days

Cold removal rate

100%

Dep drift

2

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Topics

Software

Software › Infrastructure

ThirdPartyClient

Software › Infrastructure › DataImport

Depended on by (6)

Bioconductor (6)

AnVIL AnVILBase AnVILPublish AnVILWorkflow terraTCGAdata AnVILVRS

People

Marcel Ramos author maintainer
Martin Morgan author
Nitesh Turaga author

At a glance

Version: 1.6.2
Category: software
License: Artistic-2.0
Requires R: ≥ 4.6
Maintainer: Marcel Ramos
Entered: 3.20 · Oct 30, 2024
Current: 3.23 · Apr 29, 2026

Available on

CRAN r2u Bioconductor autoCRAN COPR

Dependencies

Depends

R (>= 4.5.0)

Imports

AnVILBaseBiocBiocBaseUtilsBiocdplyrGCPtools (>= 0.99.4)Biochttr jsonlitemethodsrlangstatstibble tidyrutils

Suggests

AnVILBiocBiocStyleBiocknitr rmarkdown testthat withr

Source & history

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("AnVILGCP")

Format

Ramos, M., Morgan, M., & Turaga, N. (2026). AnVILGCP: The GCP R Client for the AnVIL (Version 1.6.2) [Computer software]. https://bioconductor.org/packages/AnVILGCP

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for AnVILGCP version 1.6.2 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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