mia

Description

mia implements tools for microbiome analysis based on the SummarizedExperiment, SingleCellExperiment and TreeSummarizedExperiment infrastructure. Data wrangling and analysis in the context of taxonomic data is the main scope. Additional functions for common task are implemented such as community indices calculation and summarization.

Code

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Topics

Depended on by (22)

People

• Tuomas Borman author maintainer
• Eineje Ameh contributor
• Moritz Emanuel Beber contributor
• Aituar Bektanov contributor
• Chouaib Benchraka contributor
• Giulio Benedetti contributor
• Domenick Braccia contributor
• Danielle Callan contributor
• Yang Cao contributor
• Héctor Corrada Bravo contributor
• Basil Courbayre contributor
• Noah De Gunst contributor
• Pande Erawijantari contributor
• Felix G.M. Ernst author
• Sam Hillman contributor
• Rasmus Hindström contributor
• Shadman Ishraq contributor
• Akewak Jeba contributor
• Jayaram Kancherla contributor
• Leo Lahti author
• Himmi Lindgren contributor
• Geraldson Muluh contributor
• Nathan D. Olson contributor
• Hervé Pagès contributor
• Jesse Pasanen contributor
• Théotime Pralas contributor
• Katariina Pärnänen contributor
• Marcel Ramos contributor
• Artur Sannikov contributor
• Sudarshan A. Shetty author
• Rajesh Shigdel contributor
• Eetu Tammi contributor
• Levi Waldron contributor