AnVILBase
Bioc currentGeneric functions for interacting with the AnVIL ecosystem
Release Lineage
Entered 3.20 · Oct 30, 2024
Current · Requires R 4.6
Description
Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
7 4 exported
Complexity
3 avg / 8 max
Call network
7 nodes / 2 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,053
Files
40
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
27
Internal functions
1
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
4
First release
2024-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 17includes a package overview page
- Examples that run
- 100%15 run in a plain check (2 of them under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Use
GCPtools::gcloud_exists()for checkinggcloudavailability.
From NEWS.md in the release
Repository practices
Checks run against github.com/bioconductor/anvilbase on 2026-10-22.
No development-tooling practices detected in the upstream repository.
Topics
Depended on by (5)
Bioconductor (5)
Suggested by (2)
People
- Marcel Ramos author maintainer
- NIH NHGRI U24HG004059 funder
- Martin Morgan author contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("AnVILBase")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.