imageTCGAutils
Bioc currentUtility functions for working with histopathology images
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
Utility functions for working with CONCH data, listing remote files. One function assigns HoverNet nuclei to ProvGigaPath tiles with a scale factor to align coordinates. Provides internal utility functions for 'imageFeatureTCGA' and most functions are not meant for end users.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
10 4 exported
Complexity
2.1 avg / 7 max
Call network
10 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
839
Files
26
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
6
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-04-28
Latest release
2026-04-28
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 3
- Examples that run
- 100%3 run in a plain check (2 of them under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- imageTCGAutils HTML
New features
- Initial Bioconductor release!
From NEWS.md in the release
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/waldronlab/imagetcgautils on 2026-10-18.
GitHub Pages site
Topics
Suggested by (1)
People
-
Ilaria Billato
author
maintainer
Department of Biology, University of Padova
-
Eslam Abousamra
contributor
CUNY Graduate School of Public Health and Health Policy, New York, NY USA
-
Marcel Ramos
author
CUNY Graduate School of Public Health and Health Policy, New York, NY USA
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("imageTCGAutils")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.