SingleCellMultiModal
Bioc currentIntegrating Multi-modal Single Cell Experiment datasets
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
SingleCellMultiModal is an ExperimentHub package that serves multiple datasets obtained from GEO and other sources and represents them as MultiAssayExperiment objects. We provide several multi-modal datasets including scNMT, 10X Multiome, seqFISH, CITEseq, SCoPE2, and others. The scope of the package is is to provide data for benchmarking and analysis. To cite, use the 'citation' function and see <https://doi.org/10.1371/journal.pcbi.1011324>.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
41 13 exported
Complexity
2.7 avg / 8 max
Call network
41 nodes / 40 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,487
Files
67
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
13
Internal functions
25
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
14
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 31%
Topics
Depended on by (3)
People
- Marcel Ramos author maintainer
- Al Abadi contributor
- Ricard Argelaguet author
- Kelly Eckenrode author
- Ludwig Geistlinger author
- Dario Righelli author
- Christophe Vanderaa contributor
- Levi Waldron author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("SingleCellMultiModal")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.