biocthis
Bioc currentAutomate package and project setup for Bioconductor packages
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
This package expands the usethis package with the goal of helping automate the process of creating R packages for Bioconductor or making them Bioconductor-friendly.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
29 23 exported
Complexity
1.9 avg / 10 max
Call network
29 nodes / 18 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,497
Files
59
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
23
Internal functions
6
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2021-02-24
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 16
- Examples that run
- 93%14 run in a plain check · 1 never run
- Exported functions with examples
- 94%
- Documented parameters
- 99%
- Return-value docs
- 94%
- Help pages citing references
- 0%
Repository practices
12 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/lcolladotor/biocthis on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
The repository owner accepts GitHub Sponsors
GitHub Pages site last deployed 2026-03-31 · The repository has a site deploy workflow
Topics
Depended on by (1)
Bioconductor (1)
People
- Leonardo Collado-Torres author maintainer
- Marcel Ramos contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("biocthis")The package provides a citation file that builds its entry when R runs it. Run citation() to see it.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.