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AnVIL

Bioc current

Bioconductor on the AnVIL compute environment

v1.24.0 · software · Artistic-2.0

Release Lineage

Entered 3.11 · Apr 28, 2020

Current · Requires R 4.6

1.0 In 13 of 49 releases 3.23

Description

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.

Code

Structure

Lines of code

3,437

Files

55

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,354 (39.4%)Tests 190 (5.5%)Docs 465 (13.5%)Vignettes 1,428 (41.5%)

API

Exported functions

22

Internal functions

14

Recent export changes

v3.23+1 anvil_set_auth_json
v3.22−49 avbucket, avdata, avdata_import 46 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.14

testthat edition

CI present

Yes

CI type

["github-actions"]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

77.3%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

4.6.0

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

13

First release

2020-05-03

Latest release

2026-04-28

Avg cadence

161 days

Cold removal rate

100%

Dep drift

18

LOC over versions

v3.11: 3,410 LOCv3.12: 5,026 LOCv3.13: 6,643 LOCv3.14: 6,802 LOCv3.15: 8,478 LOCv3.16: 9,212 LOCv3.17: 9,613 LOCv3.18: 9,729 LOCv3.19: 10,050 LOCv3.20: 8,525 LOCv3.21: 8,036 LOCv3.22: 3,224 LOCv3.23: 3,437 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Depended on by (10)

People