GNOSIS
Bioc currentGenomics explorer using statistical and survival analysis in R
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
76 1 exported
Complexity
4.1 avg / 48 max
Call network
76 nodes / 74 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
15,859
Files
61
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
56
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
12
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.3.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 1
- Examples that run
- 100%1 run in a plain check (under a condition)
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0%
- GNOSIS Overview HTML
Repository practices
Checks run against github.com/lydia-king/gnosis on 2026-10-11.
No development-tooling practices detected in the upstream repository.
Topics
People
- Lydia King author maintainer
- Marcel Ramos contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("GNOSIS")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.12688/hrbopenres.13476.2.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.