minfi
Bioc currentAnalyze Illumina Infinium DNA methylation arrays
Release Lineage
Entered 2.9 · Nov 1, 2011
Current · Requires R 4.6
Description
Tools to analyze & visualize Illumina Infinium methylation arrays.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
155 71 exported
Complexity
4.6 avg / 26 max
Call network
155 nodes / 203 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
13,913
Files
126
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
81
Internal functions
82
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
98.8%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
50%
Unsafe pattern score
0
Dep constraint coverage
26.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
30
First release
2011-10-31
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
29
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 51 (1 internal)includes a package overview page
- Examples that run
- 89%39 run in a plain check · 5 never run
- Exported functions with examples
- 91%
- Documented parameters
- 98%
- Return-value docs
- 98%
- Help pages citing references
- 20%
- minfi User's Guide HTML
Repository practices
2 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/hansenlab/minfi on 2026-10-11.
Topics
Depended on by (50)
Show 45 packagesHide 45 packages
Bioconductor (50)
People
- Kasper Daniel Hansen maintainer author
- Shan V. Andrews contributor
- Martin Aryee author
- Jean-Philippe Fortin contributor
- Peter F. Hickey contributor
- E. Andres Houseman contributor
- Rafael A. Irizarry author
- Andrew E. Jaffe contributor
- Jovana Maksimovic contributor
- Tim Triche contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("minfi")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/btu049, 10.1186/gb-2012-13-6-r44, 10.1186/s13059-014-0503-2, 10.1093/nar/gkt090, 10.1186/s13059-015-0741-y, 10.1186/s13072-016-0107-z, 10.1093/bioinformatics/btw691.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.