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GEOquery

Bioc current

Get data from NCBI Gene Expression Omnibus (GEO)

v2.80.0 · software · MIT + file LICENSE
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Release Lineage

Entered 1.8 · Apr 27, 2006

Current · Requires R 4.6

1.0 In 41 of 49 releases 3.23

Description

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Microarray
Software › Infrastructure › DataImport
Software › Technology › Microarray › OneChannel
Software › Technology › Microarray › TwoChannel
Software › Technology › SAGE

Depended on by (91)

Bioconductor (76)

AUCell autonomics bigmelon ChIPXpress COTAN ctsGE dearseq DExMA diffcoexp DrugVsDisease dyebias EGAD EpiDISH EpiMix epiSeeker fgsea FLAMES GeneExpressionSignature GenomicOZone GeoTcgaData methylclock minfi Moonlight2R MoonlightR multiClust MultiDataSet omicsPrint PCAtools phantasus phantasusLite +46 more

CRAN (15)

BioUtils RCPA geneExpressionFromGEO AnnoProbe BED CimpleG MLML2R NACHO TcGSA easybio fdrci maGUI metaMA scregclust tinyarray

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