illuminaio
Bioc currentParsing Illumina Microarray Output Files
Release Lineage
Entered 2.12 · Apr 4, 2013
Current · Requires R 4.6
Description
Tools for parsing Illumina's microarray output files, including IDAT.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
13 3 exported
Complexity
6.5 avg / 16 max
Call network
13 nodes / 7 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,704
Files
29
Compiled share
33.2%
Has compiled src
Yes
Language breakdown
API
Exported functions
3
Internal functions
5
Testing
Has tests
Yes
Test-to-code ratio
0.22
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
27
First release
2013-04-03
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 3 (1 internal)
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- 33%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 33%
Repository practices
6 development-tooling and community-health practices detected across 5 families in the upstream repository
Checks run against github.com/henrikbengtsson/illuminaio on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
Show all practicesHide 1 practice
Topics
Depended on by (10)
Bioconductor (10)
Suggested by (1)
People
- Kasper Daniel Hansen author maintainer
- Keith Baggerly author
- Henrik Bengtsson author
- Matt Ritchie author
- Mike L. Smith author
- Tim Triche Jr. contributor
Cite
Cite this package
Run in R for the authors' entry:
citation("illuminaio")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.12688/f1000research.2-264.v1.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.