genefilter
Bioc currentgenefilter: methods for filtering genes from high-throughput experiments
Release Lineage
Entered 1.0 · Jan 5, 2001
Current · Requires R 4.6
Description
Some basic functions for filtering genes.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
64 35 exported
Complexity
3.6 avg / 14 max
Call network
64 nodes / 36 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,608
Files
75
Compiled share
21.4%
Has compiled src
Yes
Language breakdown
API
Exported functions
39
Internal functions
10
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
33.3%
Unsafe pattern score
3
Dep constraint coverage
11.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
46
First release
2002-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
15
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 28
- Examples that run
- 85%23 run in a plain check (1 of them under a condition) · 4 hold no code
- Exported functions with examples
- 100%
- Documented parameters
- 98%
- Return-value docs
- 96%
- Help pages citing references
- 21%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
Topics
Depended on by (62)
Show 65 packagesHide 65 packages
Bioconductor (57)
CRAN (5)
Suggested by (51)
People
- Bioconductor Package Maintainer maintainer
-
Khadijah Amusat
contributor
Converted genefilter vignette from Sweave to RMarkdown / HTML.
- Vincent J. Carey author
- Robert Gentleman author
- Florian Hahne author
- Wolfgang Huber author
-
Emmanuel Taiwo
contributor
'howtogenefinder' vignette translation from Sweave to RMarkdown / HTML.
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("genefilter")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.