bigmelon
Bioc currentIllumina methylation array analysis for large experiments
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
Methods for working with Illumina arrays using gdsfmt.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
52 0 exported
Complexity
8 avg / 57 max
Call network
52 nodes / 37 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,829
Files
54
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
45
Internal functions
3
Testing
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
25%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2016-10-17
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 25 (1 internal)includes a package overview page
- Examples that run
- 94%16 run in a plain check · 1 hold no code
- Exported functions with examples
- 73%
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 8%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
1 practice detected in the Bioconductor git repository
Datasets
Topics
People
- Leonard C. Schalkwyk maintainer author
- Tyler J. Gorrie-Stone author
- Karim Malki author
- Ayden Saffari author
Cite
Cite this package
Run in R for the authors' entry:
citation("bigmelon")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1093/bioinformatics/bty713.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.