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brgedata

Bioc current

Exposures, Gene Expression and Methylation data for ilustration purpouses

v1.34.0 · Package record · experiment · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.

Advisories

None published for Bioconductor

Call graph

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Structure

Lines of code

255

Files

150

Compiled share

0%

Has compiled src

No

Language breakdown

R 51 (20%)Docs 96 (37.6%)Vignettes 108 (42.4%)

API

Exported functions

0

Internal functions

0

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

–

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.4

System requirements

–

C++ standard

–

License

MIT + file LICENSE

License flags

SPDX valid, OSI approved

History

Versions

18

First release

2018-01-26

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

–

Dep drift

0

LOC over versions

v3.6: 255 LOCv3.7: 255 LOCv3.8: 255 LOCv3.9: 255 LOCv3.10: 255 LOCv3.11: 255 LOCv3.12: 255 LOCv3.13: 255 LOCv3.14: 255 LOCv3.15: 255 LOCv3.16: 255 LOCv3.17: 255 LOCv3.18: 255 LOCv3.19: 255 LOCv3.20: 255 LOCv3.21: 255 LOCv3.22: 255 LOCv3.23: 255 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMEYes · 223 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION
Help pages
5includes a package overview page
Examples that run
100%3 run in a plain check
Exported functions with examples
not tracked
Documented parameters
not tracked
Return-value docs
not tracked
Help pages citing references
0%
Vignettes (1)
How these are measured

Repository practices

Bioconductor git repository

Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.

No development-tooling practices detected in the Bioconductor git repository.

How this is detected

Datasets

Bundled datasets · 130
NameClassSizeAlso in
FEMALE_2291data.frame41,495 × 5No other package
FEMALE_2439data.frame41,495 × 5No other package
SAMPLE_1data.frame41,495 × 5No other package
SAMPLE_10data.frame41,495 × 5No other package
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SAMPLE_34data.frame41,495 × 5No other package
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SAMPLE_47data.frame41,495 × 5No other package
SAMPLE_48data.frame41,495 × 5No other package
SAMPLE_49data.frame41,495 × 5No other package
SAMPLE_5data.frame41,495 × 5No other package
SAMPLE_50data.frame41,495 × 5No other package
SAMPLE_51data.frame41,495 × 5No other package
SAMPLE_52data.frame41,495 × 5No other package
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SAMPLE_54data.frame41,495 × 5No other package
SAMPLE_55data.frame41,495 × 5No other package
SAMPLE_56data.frame41,495 × 5No other package
SAMPLE_57data.frame41,495 × 5No other package
SAMPLE_58data.frame41,495 × 5No other package
SAMPLE_59data.frame41,495 × 5No other package
SAMPLE_6data.frame41,495 × 5No other package
SAMPLE_60data.frame41,495 × 5No other package
SAMPLE_61data.frame41,495 × 5No other package
SAMPLE_62data.frame41,495 × 5No other package
SAMPLE_63data.frame41,495 × 5No other package
SAMPLE_64data.frame41,495 × 5No other package
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SAMPLE_79data.frame41,495 × 5No other package
SAMPLE_8data.frame41,495 × 5No other package
SAMPLE_80data.frame41,495 × 5No other package
SAMPLE_81data.frame41,495 × 5No other package
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SAMPLE_84data.frame41,495 × 5No other package
SAMPLE_85data.frame41,495 × 5No other package
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SAMPLE_87data.frame41,495 × 5No other package
SAMPLE_88data.frame41,495 × 5No other package
SAMPLE_89data.frame41,495 × 5No other package
SAMPLE_9data.frame41,495 × 5No other package
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SAMPLE_91data.frame41,495 × 5No other package
SAMPLE_92data.frame41,495 × 5No other package
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SAMPLE_94data.frame41,495 × 5No other package
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SAMPLE_96data.frame41,495 × 5No other package
SAMPLE_97data.frame41,495 × 5No other package
SAMPLE_98data.frame41,495 × 5No other package
SAMPLE_99data.frame41,495 × 5No other package
brge_expo–––
brge_gexp–––
brge_methy–––
brge_prot–––

All of brgedata's data objects

Topics

ExperimentData
ExperimentData › OrganismData › Homo_sapiens_Data
ExperimentData › TechnologyData › MicroarrayData
ExperimentData › TechnologyData › MicroarrayData › MethylationArrayData
Maintainer
Dolors Pelegri-Siso

Available on

CRANr2uBioconductorautoCRANCOPR

Suggested by (3)

MEAL MultiDataSet omicRexposome

People

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("brgedata")
Pelegri-Siso, D., Gonzalez, J. R., Hernandez-Ferrer, C., & Ruiz-Arenas, C. (2026). brgedata: Exposures, Gene Expression and Methylation data for ilustration purpouses (Version 1.34.0) [Computer software]. https://bioconductor.org/packages/brgedata

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for brgedata version 1.34.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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