Bioconductor Packages

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

Accessing AlphaMissense Data Resources in R

Statistical analysis of sequins

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BEAT - BS-Seq Epimutation Analysis Toolkit

Model higher-order methylation profiles

Baffling Recursive Algorithm for Isotope distributioN calculations

Computational pipeline for computing probability of modification from structure probing experiment data

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Batch Effects Quality Control Software

Clustering and Resolution Enhancement of Spatial Transcriptomes

Bias-free Footprint Enrichment Test

Collection of annotation related methods for mass spectrometry data

Cytometry dATa anALYSis Tools

Co-expression Modules identification Tool

Statistical analysis for the Colony Formation Assay

Fast and accurate scRNA-seq cell type identification

Add-on to CellNOptR: Discretized time treatments

ODE add-on to CellNOptR

Coordinate Covariation Analysis

A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing

Combinatorial Polyfunctionality Analysis of Single Cells

Cell OrderiNg by FluorEScence Signal

Design of guide RNAs in CRISPR genome-editing systems

A mass spectrometry imaging toolbox for statistical analysis

Causal network analysis methods

Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Reconstruction, visualization and analysis of branching trajectories

Infers clonal composition of a tumor

Clustering of Immune Receptor Repertoires

Coordinated Gene Activity in Pattern Sets

Coverage visualization package for R

Tools for counting and visualising mutations in a target location

Robust prediction of clinical outcomes using cytometry data without cell gating

Conditional Differential Analysis for Flow and Mass Cytometry Experiments

A GatingML Interface for Cross Platform Cytometry Data Sharing

Automation and visualization of flow cytometry data analysis pipelines

GUI's for visualization of flow cytometry data analysis pipelines

Tools for curating, analyzing, and manipulating biological sequences

Differential gene expression data formats converter

Report of DEG analysis

Identify Differentially Expressed Genes from RNA-seq data

Differential Enrichment Scan 2

Differential gene expression analysis based on the negative binomial distribution