conumee
Bioc currentEnhanced copy-number variation analysis using Illumina DNA methylation arrays
Release Lineage
Entered 3.1 · Apr 17, 2015
Current · Requires R 4.6
Description
This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 2 exported
Complexity
7 avg / 17 max
Call network
6 nodes / 3 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,897
Files
45
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
4
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
23
First release
2015-04-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 22
- Examples that run
- 100%14 run in a plain check
- Exported functions with examples
- 92%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- conumee HTML
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| detail_regions | – | – | – |
| exclude_regions | – | – | – |
| tcgaBRCA.sentrix2name | vector | 877 elements | No other package |
1 internal object is bundled for the package's own use and not listed here.
Topics
Suggested by (1)
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' entry:
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