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DMRcate

Bioc current

Methylation array and sequencing spatial analysis methods

v3.8.0 · software · file LICENSE
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Release Lineage

Entered 2.14 · Apr 14, 2014

Current · Requires R 4.6

1.0 In 25 of 49 releases 3.23

Description

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

Code

Code metrics have not been computed for this package yet.

Topics

Software › BiologicalQuestion › DifferentialMethylation
Software › AssayDomain › GeneExpression
Software › Technology › Microarray
Software › Technology › Microarray › MethylationArray
Software › ResearchField › Genetics
Software › BiologicalQuestion › DifferentialExpression
Software › BiologicalQuestion › GenomeAnnotation
Software › AssayDomain › DNAMethylation
Software › Technology › Microarray › OneChannel
Software › Technology › Microarray › TwoChannel
Software › WorkflowStep › MultipleComparison
Software › WorkflowStep › QualityControl
Software › StatisticalMethod › TimeCourse
Software › Technology › Sequencing
Software › Technology › Sequencing › WholeGenome
Software › ResearchField › Epigenetics
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Preprocessing
Software › Infrastructure › DataImport

Depended on by (4)

Bioconductor (3)

ChAMP missMethyl methylationArrayAnalysis

CRAN (1)

easyEWAS

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