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DelayedArray

Bioc current

A unified framework for working transparently with on-disk and in-memory array-like datasets

v0.38.2 · software · Artistic-2.0
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Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects (typically with Rle columns), Matrix objects, ordinary arrays and, data frames.

Code

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Topics

Software › Infrastructure
Software › Infrastructure › DataRepresentation
Software › WorkflowStep › Annotation
Software › BiologicalQuestion › GenomeAnnotation

Depended on by (142)

Bioconductor (134)

adverSCarial alabaster.matrix AUCell batchelor beachmat beachmat.hdf5 beachmat.tiledb BiocGenerics BiocNeighbors BiocSingular bsseq celaref celda Cepo chihaya ChIPpeakAnno ChromSCape clusterExperiment concordexR CRISPRseek cytomapper decontX DelayedDataFrame DelayedMatrixStats DelayedRandomArray DelayedTensor DEScan2 dreamlet DropletUtils ELMER +104 more

CRAN (8)

cellGeometry ebvcube rliger scDiffCom spatialGE Seurat SeuratObject methFuse

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