scuttle
Bioc currentLegacy Utilities for Single-Cell RNA-Seq Analysis
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Provides some legacy utility functions for performing single-cell analyses. Most of these functions are deprecated in favor of newer, more performant alternatives. We just keep this package around for back-compatibility and to point to the replacement functions.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
115 32 exported
Complexity
3.5 avg / 15 max
Call network
115 nodes / 84 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
12,782
Files
121
Compiled share
7.5%
Has compiled src
Yes
Language breakdown
API
Exported functions
53
Internal functions
59
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.69
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-12-16
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 95%
- References docs
- 5%
Topics
Depended on by (76)
Bioconductor (72)
CRAN (4)
People
- Aaron Lun author maintainer
- Davis McCarthy author
Cite
Cite this package
Run in R for the authors' preferred citation:
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Cite the R Observatory
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