miaDash
Bioc currentDashboard for the interactive analysis and exploration of microbiome data
Release Lineage
Entered 3.21 · Apr 16, 2025
Current · Requires R 4.6
Description
miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
17 1 exported
Complexity
3.4 avg / 21 max
Call network
17 nodes / 17 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,680
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
16
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
15
Dep constraint coverage
10.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2025-04-15
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 6 (5 internal)
- Examples that run
- 100%1 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 0% with a bibliography file
- miaDash HTML
Repository practices
6 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/microbiome/miadash on 2026-10-11.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2026-05-11
Topics
People
- Giulio Benedetti author maintainer
- Akewak Jeba contributor
- Leo Lahti author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("miaDash")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.