Levi Waldron

3 packages On CRAN since Jan 2011 (15 years) · last active 1 year ago On Bioconductor since Oct 2012 (14 years) · last active 6 months ago

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Downloads

2.3K

Last 30 days

6.8K

Last 90 days

34.2K

Last year

Average trend: +13% (30d vs prior 30d)

Top Packages by Downloads

HGNChelper

1.7K

pensim

317

ConconiAnaerobicThresholdTest

290

Portfolio Check Status

Aggregate CRAN check results across 2 maintained packages.

NOTE

Recent Activity

ConconiAnaerobicThresholdTest new v1.0.0 Mar 10, 2026

Conconi Estimate of Anaerobic Threshold from a TCX File

HGNChelper updated v0.8.15 Nov 15, 2024

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

HGNChelper updated v0.8.14 May 17, 2024

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

pensim updated v1.3.6 Dec 8, 2022

Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression

pensim updated v1.3.3 May 10, 2021

Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression

pensim updated v1.3.2 Apr 19, 2020

Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression

pensim updated v1.3.1 Mar 27, 2020

Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression

HGNChelper updated v0.8.1 Oct 23, 2019

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

HGNChelper updated v0.7.1 Mar 5, 2019

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

HGNChelper updated v0.5.2 Jul 5, 2018

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

Maintained Packages

2 packages

Package	Title	Downloads	Version
HGNChelper 1.7K downloads/30d	Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols	1.7K	0.8.15
ConconiAnaerobicThresholdTest 290 downloads/30d	Conconi Estimate of Anaerobic Threshold from a TCX File	290	1.0.0

Other Roles

1 package

Package	Title	Downloads	Version
pensim 317 downloads/30d	Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression	317	1.3.6

Bioconductor Packages

29 packages

Package	Title	Category	Version
CNVRanger Bioc	Summarization and expression/phenotype association of CNV ranges	software	1.28.1
EnrichmentBrowser Bioc	Seamless navigation through combined results of set-based and network-based enrichment analysis	software	2.42.0
GSEABenchmarkeR Bioc	Reproducible GSEA Benchmarking	software	1.32.0
GenomicSuperSignature Bioc	Interpretation of RNA-seq experiments through robust, efficient comparison to public databases	software	1.20.0
HMP16SData Bioc	16S rRNA Sequencing Data from the Human Microbiome Project	experiment	1.32.0
HMP2Data Bioc	16s rRNA sequencing data from the Human Microbiome Project 2	experiment	1.25.0
MicrobiomeBenchmarkData Bioc	Datasets for benchmarking in microbiome research	experiment	1.14.0
MultiAssayExperiment Bioc	Software for the integration of multi-omics experiments in Bioconductor	software	1.38.0
SingleCellMultiModal Bioc	Integrating Multi-modal Single Cell Experiment datasets	experiment	1.24.0
TCGAutils Bioc	TCGA utility functions for data management	software	1.32.2
ZarrArray Bioc	Bring Zarr datasets in R as DelayedArray objects	software	1.0.1
bedbaser Bioc	A BEDbase client	software	1.4.2
bugphyzz Bioc	A harmonized data resource and software for enrichment analysis of microbial physiologies	experiment	1.6.0
bugsigdbr Bioc	R-side access to published microbial signatures from BugSigDB	software	1.18.0
cBioPortalData Bioc	Exposes and Makes Available Data from the cBioPortal Web Resources	software	2.24.0
consensusOV Bioc	Gene expression-based subtype classification for high-grade serous ovarian cancer	software	1.34.0
curatedBreastData Bioc	Curated breast cancer gene expression data with survival and treatment information	experiment	2.40.3
curatedCRCData Bioc	Colorectal Cancer Gene Expression Analysis	experiment	2.44.0
curatedMetagenomicData Bioc	Curated Metagenomic Data of the Human Microbiome	experiment	3.20.0
curatedOvarianData Bioc	Clinically Annotated Data for the Ovarian Cancer Transcriptome	experiment	1.50.0
curatedTCGAData Bioc	Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects	experiment	1.34.0
doppelgangR Bioc	Identify likely duplicate samples from genomic or meta-data	software	1.40.0
ffpe Bioc	Quality assessment and control for FFPE microarray expression data	software	1.56.0
ffpeExampleData Bioc	Illumina DASL example microarray data	experiment	1.50.0
imageTCGA Bioc	TCGA Diagnostic Image Database Explorer	software	1.4.0
lefser Bioc	R implementation of the LEfSE method for microbiome biomarker discovery	software	1.22.0
mia Bioc	Microbiome analysis	software	1.20.0
parkinsonsMetagenomicData Bioc removed	Suite of Functions to Retrieve Parkinson's Metagenomics Data from the Google Cloud Bucket and Hugging Face		0.99.0
rols Bioc	An R interface to the Ontology Lookup Service	software	3.8.3

Package repositories

Repositories of packages Levi Waldron maintains where an AI coding tool was found. Other people commit to these repositories too, so each line describes the repository, not Levi Waldron's own work.

waldronlab/curatedCRCData ↗(organization: waldronlab)
Packages: curatedCRCData
- Claude Codefirst seen 2026-10-03
  Pull request it wrote: opened by a project member
  Commits: at least 6 crediting it in the message
- Gemini CLIfirst seen 2026-04-10
  Commits: at least 8 crediting it in the message
- GitHub Copilotfirst seen 2026-05-14
  Pull request: opened by its own account
  Commits: 1 by its own account
waldronlab/doppelgangR ↗(organization: waldronlab)
Packages: doppelgangR
- Antigravityfirst seen on or before 2026-07-17
  Commits: at least 6 crediting it in the message
- Gemini CLIfirst seen 2026-07-17
  Named in .gitignore: .gemini

Finding nothing does not mean no tool was used. How this is detected.

Roles

Maintains 2

Impact

packages depend on their work

dependency h-index

packages with 10+ dependents

Most depended on

HGNChelper 4 deps

Frequent Collaborators

Ayush Aggarwal 1 pkg

Markus Riester 1 pkg

Sehyun Oh 1 pkg

View collaborator network →

Career

On CRAN since Jan 2011 (15 years) · last active 1 year ago

On Bioconductor since Oct 2012 (14 years) · last active 6 months ago

Links

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