TreeSummarizedExperiment
Bioc currentTreeSummarizedExperiment: a S4 Class for Data with Tree Structures
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
73 31 exported
Complexity
3.9 avg / 19 max
Call network
73 nodes / 75 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
9,727
Files
125
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
45
Internal functions
42
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.28
testthat edition
–
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
7.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
–
C++ standard
–
License
GPL (>=2)
License flags
not SPDX, not OSI
History
Versions
15
First release
2019-06-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 91%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (33)
Bioconductor (29)
CRAN (4)
People
- Ruizhu Huang author maintainer
- Tuomas Borman contributor
- Felix G.M. Ernst contributor
- Mark Robinson contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TreeSummarizedExperiment")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.