DECIPHER
Bioc currentTools for curating, analyzing, and manipulating biological sequences
Release Lineage
Entered 2.9 · Nov 1, 2011
Current · Requires R 4.6
Description
A toolset for deciphering and managing biological sequences.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
366 67 exported
Complexity
42.7 avg / 443 max
Call network
366 nodes / 544 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
81,806
Files
283
Compiled share
40.7%
Has compiled src
Yes
Language breakdown
API
Exported functions
69
Internal functions
68
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
25.9%
Unsafe pattern score
78
Dep constraint coverage
14.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
30
First release
2011-10-31
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
7
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 98%
- Return-value docs
- 97%
- References docs
- 59%
Topics
Depended on by (17)
Bioconductor (10)
People
Erik Wright
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DECIPHER")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.