ggsc
Bioc currentVisualizing Single Cell and Spatial Transcriptomics
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
Useful functions to visualize single cell and spatial data. It supports visualizing 'Seurat', 'SingleCellExperiment' and 'SpatialExperiment' objects through grammar of graphics syntax implemented in 'ggplot2'.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
70 13 exported
Complexity
3.2 avg / 20 max
Call network
70 nodes / 36 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,718
Files
49
Compiled share
4%
Has compiled src
Yes
Language breakdown
API
Exported functions
23
Internal functions
47
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
3
Docs
Roxygen coverage
95.7%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
4.5%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
1 externalGNU make
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-31
Latest release
2026-05-17
Avg cadence
182 days
Cold removal rate
100%
Dep drift
3
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 21 (2 internal)includes a package overview page
- Examples that run
- 87%13 run in a plain check · 2 never run
- Exported functions with examples
- 79%
- Documented parameters
- 98%
- Return-value docs
- 95%
- Help pages citing references
- 0%
- compatible with Seurat V5 (2026-05-17, Sun)
From NEWS.md in the release
Repository practices
5 development-tooling and community-health practices detected across 3 families in the upstream repository
Checks run against github.com/yulab-smu/ggsc on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
Topics
Suggested by (1)
People
- Guangchuang Yu author maintainer copyright holder
- Noriaki Sato contributor
- Shuangbin Xu author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ggsc")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.