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scran

Bioc current

Methods for Single-Cell RNA-Seq Data Analysis

v1.40.0 · software · GPL-3
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Implements miscellaneous functions for interpretation of single-cell RNA-seq data. Methods are provided for assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › WorkflowStep › Normalization
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software
Software › AssayDomain › GeneExpression
Software › ResearchField › Transcriptomics
Software › Technology › SingleCell
Software › StatisticalMethod › Clustering

Depended on by (104)

Bioconductor (102)

anglemania APL Banksy BASiCS BASiCStan batchelor BatchQC BayesSpace BioTIP blase bluster celda CellTrails chevreulPlot chevreulProcess ChromSCape CiteFuse clusterExperiment Coralysis decontX DeconvoBuddies destiny Dino dittoSeq DOtools epiregulon epiregulon.extra escape escheR ExperimentSubset +72 more

CRAN (2)

mixhvg Canek

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