iSEEde
Bioc currentiSEE extension for panels related to differential expression analysis
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of differential expression results. This package does not perform differential expression. Instead, it provides methods to embed precomputed differential expression results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
12 9 exported
Complexity
1.5 avg / 4 max
Call network
12 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,730
Files
48
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
3
Testing
Has tests
Yes
Test-to-code ratio
0.40
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
6
First release
2023-10-24
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11 (1 internal)includes a package overview page
- Examples that run
- 100%11 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 22%
- Help pages citing references
- 0%
Repository practices
10 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/isee/iseede on 2026-10-22.
The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel
GitHub Pages site last deployed 2024-10-31 · The repository has a site deploy workflow
Topics
Suggested by (1)
People
- Kevin Rue-Albrecht author maintainer
- Denali Therapeutics funder
- Thomas Sandmann contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("iSEEde")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.