beachmat
Bioc currentCompiling Bioconductor to Handle Each Matrix Type
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
159 38 exported
Complexity
1.9 avg / 18 max
Call network
159 nodes / 98 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,589
Files
91
Compiled share
26.6%
Has compiled src
Yes
Language breakdown
API
Exported functions
39
Internal functions
49
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
1.28
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
94.9%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
1
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-11-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
9
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
Depended on by (19)
Bioconductor (18)
CRAN (1)
People
- Aaron Lun author maintainer
- Hervé Pagès author
- Mike Smith author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("beachmat")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.