R Observatory: Metrics for scRNAseq version 2.26.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

scRNAseq

Bioc current

Collection of Public Single-Cell RNA-Seq Datasets

v2.26.0 · experiment · CC0

View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

Gene-level counts for a collection of public scRNA-seq datasets, provided as SingleCellExperiment objects with cell- and gene-level metadata.

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

75 64 exported

Complexity

3.5 avg / 19 max

Call network

75 nodes / 173 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

8,135

Files

270

Compiled share

0%

Has compiled src

No

Language breakdown

R 4,136 (50.8%)Tests 576 (7.1%)Docs 3,229 (39.7%)Vignettes 194 (2.4%)

API

Exported functions

66

Internal functions

11

Testing & CI

Has tests

Yes

Test-to-code ratio

0.14

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

9.1%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

–

System requirements

–

C++ standard

–

License

CC0

License flags

SPDX valid, not OSI

History

Versions

20

First release

2016-10-17

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

100%

Dep drift

21

LOC over versions

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

READMEYes · 173 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 96%
Return-value docs: 98%
References docs: 82%

Topics

ExperimentData › PackageTypeData › ExperimentHub

ExperimentData

ExperimentData › AssayDomainData › ExpressionData

ExperimentData › TechnologyData › SequencingData

ExperimentData › TechnologyData › SequencingData › RNASeqData

ExperimentData › TechnologyData › SequencingData › SingleCellData

Depended on by (62)

CRAN (2)

LISTO speakeasyR

People

Aaron Lun contributor maintainer
Daniel Bunis contributor
Michael Cole author
Milan Malfait contributor
Alan O'Callaghan contributor
Stephany Orjuela contributor
Jens Preussner contributor
Davide Risso author cph
Charlotte Soneson contributor

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("scRNAseq")

Format

Lun, A., Bunis, D., Cole, M., Malfait, M., O'Callaghan, A., Orjuela, S., Preussner, J., Risso, D., & Soneson, C. (2026). scRNAseq: Collection of Public Single-Cell RNA-Seq Datasets (Version 2.26.0) [Computer software]. https://bioconductor.org/packages/scRNAseq

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for scRNAseq version 2.26.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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