flowCore
Bioc currentflowCore: Basic structures for flow cytometry data
Release Lineage
Entered 2.0 · Apr 26, 2007
Current · Requires R 4.6
Description
Provides S4 data structures and basic functions to deal with flow cytometry data.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
261 72 exported
Complexity
4 avg / 59 max
Call network
261 nodes / 145 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
33,619
Files
217
Compiled share
6.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
104
Internal functions
97
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.10
testthat edition
–
Docs
Roxygen coverage
92.3%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
50%
Unsafe pattern score
3
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.0.2
System requirements
2 externalGNU make, C++17
C++ standard
C++17
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
39
First release
2007-05-04
Latest release
2026-04-28
Avg cadence
185 days
Cold removal rate
100%
Dep drift
24
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 116 (1 internal)includes a package overview page
- Examples that run
- 95%81 run in a plain check · 4 never run
- Exported functions with examples
- 85%
- Documented parameters
- 91%
- Return-value docs
- 54%
- Help pages citing references
- 20%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
4 practices detected in the Bioconductor git repository
Datasets
Topics
Depended on by (73)
Show 40 packagesHide 40 packages
Bioconductor (73)
Suggested by (10)
People
- Mike Jiang author maintainer
- B Ellis author
- Greg Finak author
- Nishant Gopalakrishnan author
- Samuel Granjeaud contributor
- Perry Haaland author
- Florian Hahne author
- Nolwenn Le Meur author
- Josef Spidlen author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("flowCore")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.