CompensAID
Bioc currentAutomated detection tool for spillover errors
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
The CompensAID is an automated quality control tool, which determines for each marker combination in the FCS file, whether there a potential presence of reference errors. Such reference errors, which represent themselves in the form of skewed populations, are detected by integrating the Secondary Stain Index (SSI) score. Marker combinations with an SSI < 1 are flagged by CompensAID.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
21 3 exported
Complexity
2.5 avg / 6 max
Call network
21 nodes / 21 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,269
Files
57
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
3
Internal functions
18
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
7.1%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-04-28
Latest release
2026-04-28
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 21 (18 internal)
- Examples that run
- 100%3 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Overview_CompensAID HTML
Repository practices
Checks run against github.com/olsman/compensaid on 2026-10-18.
No development-tooling practices detected in the upstream repository.
Topics
People
- Rosan Olsman author maintainer
- Sarah Bonte author
- Malicorne Buysse author
- Mattias Hofmans author
- Yvan Saeys author
- Sofie Van Gassen author
- Katrien Van der Borght author
- Vincent van der Velden author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CompensAID")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.