flowCHIC
Bioc currentAnalyze flow cytometric data using histogram information
Release Lineage
Entered 3.0 · Oct 14, 2014
Current · Requires R 4.6
Description
A package to analyze flow cytometric data of complex microbial communities based on histogram images
None published for Bioconductor
Call graph
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
1,122
Files
31
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
4
Internal functions
2
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.1.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
24
First release
2015-03-05
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 12includes a package overview page
- Examples that run
- 100%4 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- not tracked
- Return-value docs
- 100%
- Help pages citing references
- 42%
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| Results_overlaps | data.frame | 3 × 2 | No other package |
| Results_overlaps_incol | data.frame | 136 × 2 | No other package |
| Results_overlaps_mix | data.frame | 4,005 × 2 | No other package |
| Results_xor | data.frame | 3 × 2 | No other package |
| Results_xor_incol | data.frame | 136 × 2 | No other package |
| Results_xor_mix | data.frame | 4,005 × 2 | No other package |
| abiotic_incol | data.frame | 17 × 6 | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("flowCHIC")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.