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flowClean

Bioc current

flowClean

v1.50.0 · software · Artistic-2.0

Release Lineage

Entered 3.0 · Oct 14, 2014

Current · Requires R 4.6

1.0 In 24 of 49 releases 3.23

Description

A quality control tool for flow cytometry data based on compositional data analysis.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

19 1 exported

Complexity

4.2 avg / 19 max

Call network

19 nodes / 17 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

721

Files

9

Compiled share

0%

Has compiled src

No

Language breakdown

R 490 (68%)Docs 79 (11%)Vignettes 152 (21.1%)

API

Exported functions

1

Internal functions

18

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.15.0

System requirements

C++ standard

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

24

First release

2014-10-13

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.0: 494 LOCv3.1: 503 LOCv3.2: 553 LOCv3.3: 694 LOCv3.4: 694 LOCv3.5: 707 LOCv3.6: 707 LOCv3.7: 707 LOCv3.8: 707 LOCv3.9: 707 LOCv3.10: 707 LOCv3.11: 707 LOCv3.12: 707 LOCv3.13: 707 LOCv3.14: 707 LOCv3.15: 721 LOCv3.16: 721 LOCv3.17: 721 LOCv3.18: 721 LOCv3.19: 721 LOCv3.20: 721 LOCv3.21: 721 LOCv3.22: 721 LOCv3.23: 721 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMEYes · 40 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
100%
Return-value docs
0%
References docs
50%

Topics

People

Kipper Fletez-Brant

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("flowClean")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for flowClean version 1.50.0 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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