R Observatory: Metrics for hypergate version 0.8.5

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

hypergate

0.8.5Package record

Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

0packages depend

2.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Etienne BechtCRAN page ↗

Given a high-dimensional dataset that typically represents a cytometry dataset, and a subset of the datapoints, this algorithm outputs an hyperrectangle so that datapoints within the hyperrectangle best correspond to the specified subset. In essence, this allows the conversion of clustering algorithms' outputs to gating strategies outputs.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("hypergate", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-hypergate

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-hypergate

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-hypergate

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.5

READMEYes · 824 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 25
Examples that run: 85%11 run in a plain check (1 of them under a condition) · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 98%
Return-value docs: 38%
Help pages citing references: 4%

Vignettes (1)

Hypergate HTML

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #13,475 · ~8/day · ~231/mo

Releases R versions

Daily download trend is not available in this view yet.

29830 days

86490 days

2.8K1 year

Compare downloads with other packages →

Also on93 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing hypergate adds no packages beyond those that come with R.

Depends (1)

R >= 3.5.0

Imports (4)

statsgrDevicesutilsgraphics

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown flowCore sp sf

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Etienne Becht

Maintainer since 0.7 (2018), Author

Samuel Granjeaud

Contributor · added in 0.8

Releases (6)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.8.5Latest
record
2024-01-16 · current release · diff ↗
0.8.4
record
2023-08-31 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.8.3
record
2020-02-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.8.1
record
2019-04-17 · diff ↗
0.8
record
2018-08-31 · diff ↗ ·
added 4 exports
hgate_info, hgate_pheno, hgate_rule, hgate_sample
0.7
record
2018-05-14
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-14
Total releases: 6 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 378 KB / 1 file
Download size: 526 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("hypergate")

Format

Becht, E., & Granjeaud, S. (2024). hypergate: Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry (Version 0.8.5) [Computer software]. https://doi.org/10.32614/CRAN.package.hypergate

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for hypergate version 0.8.5 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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