R Observatory: Metrics for MuPETFlow version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

MuPETFlow

0.1.2Package record

Multiple Ploidy Estimation Tool for all Species Compatible with Flow Cytometry

0packages depend

2.3Kdownloads / year

54.5%test coverage

13/13flavors OK

Overview

About

Maintained by Cintia Gómez-MuñozCRAN page ↗

A graphical user interface tool to estimate ploidy from DNA cells stained with fluorescent dyes and analyzed by flow cytometry, following the methodology of Gómez-Muñoz and Fischer (2024) doi:10.1101/2024.01.24.577056. Features include multiple file uploading and configuration, peak fluorescence intensity detection, histogram visualizations, peak error curation, ploidy and genome size calculations, and easy results export.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MuPETFlow", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-mupetflow

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MuPETFlow

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MuPETFlow

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-18
ERROR13 OK, 1 ERROR2026-04-16
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMEYes · 764 wordsVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 1
Examples that run: 100%1 run in a plain check (under a condition)
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

MuPETFlow-introduction HTML

How these are measured

Downloads

2.3K

CRAN downloads in the past year

Rank #19,073 · ~6/day · ~191/mo

Releases R versions

Daily download trend is not available in this view yet.

26330 days

68290 days

2.3K1 year

Compare downloads with other packages →

Also on82 r2u1 autocran

How downloads are counted

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing MuPETFlow adds 70 packages (35 with compiled code, 60 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, bslib 5.6 MB.

Depends (0)

none

Imports (11)

BiocManager dplyr DT ggplot2 ggrepel gridExtra markdown shiny shinythemes tidyr zoo

LinkingTo (0)

none

Suggests (3)

knitr flowCore rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (2)

Cintia Gómez-Muñoz

Author, Maintainer since 0.1.0 (2025)

Gilles Fischer

Author

Releases (3)

Pick two releases to compare their code metrics.

0.1.2Latest
record
2026-08-25 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.1.1
record
2025-01-15 · diff ↗
0.1.0
record
2025-01-07
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-01-07
Total releases: 3 / 1 yrs
License: GPL (>= 3) OSI
Download size: 532 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("MuPETFlow")

Format

Gómez-Muñoz, C., & Fischer, G. (2026). MuPETFlow: Multiple Ploidy Estimation Tool for all Species Compatible with Flow Cytometry (Version 0.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.MuPETFlow

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for MuPETFlow version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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