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CONFESS

Bioc current

Cell OrderiNg by FluorEScence Signal

v1.40.0 · software · GPL-2

Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Single Cell Fluidigm Spot Detector.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

110 17 exported

Complexity

6.9 avg / 40 max

Call network

110 nodes / 113 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

15,204

Files

156

Compiled share

0%

Has compiled src

No

Language breakdown

R 10,003 (65.8%)Docs 4,688 (30.8%)Vignettes 513 (3.4%)

API

Exported functions

17

Internal functions

65

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

3%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.3

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

21

First release

2016-05-15

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

1

LOC over versions

v3.3: 15,166 LOCv3.4: 15,166 LOCv3.5: 15,167 LOCv3.6: 15,167 LOCv3.7: 15,167 LOCv3.8: 15,179 LOCv3.9: 15,179 LOCv3.10: 15,204 LOCv3.11: 15,204 LOCv3.12: 15,204 LOCv3.13: 15,204 LOCv3.14: 15,204 LOCv3.15: 15,204 LOCv3.16: 15,204 LOCv3.17: 15,204 LOCv3.18: 15,204 LOCv3.19: 15,204 LOCv3.20: 15,204 LOCv3.21: 15,204 LOCv3.22: 15,204 LOCv3.23: 15,204 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

Documentation
READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 0% structuredCode of conductNoContributing guideNo
Examples that run
100%
Documented parameters
95%
Return-value docs
100%
References docs
0%

Topics

People

Diana LOW

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CONFESS")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CONFESS version 1.40.0 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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