CONFESS
Bioc currentCell OrderiNg by FluorEScence Signal
Release Lineage
Entered 3.3 · May 4, 2016
Current · Requires R 4.6
Description
Single Cell Fluidigm Spot Detector.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
110 17 exported
Complexity
6.9 avg / 40 max
Call network
110 nodes / 113 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
15,204
Files
156
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
17
Internal functions
65
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
21
First release
2016-05-15
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 122 (93 internal)
- Examples that run
- 100%18 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 95%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- CONFESS PDF
- CONFESS Walkthrough HTML
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
No development-tooling practices detected in the Bioconductor git repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| Results | list | 2 elements | No other package |
| Results_of_image_analysis | data.frame | 378 × 15 | No other package |
| clu | list | 9 elements | No other package |
| estimates | list | 6 elements | No other package |
| estimates.2 | list | 6 elements | No other package |
| files | list | 6 elements | No other package |
| step1 | list | 7 elements | No other package |
| step2 | list | 3 elements | No other package |
| step2.1 | list | 18 elements | No other package |
| step3 | list | 25 elements | No other package |
| step3.1 | list | 27 elements | No other package |
| step4 | list | 39 elements | No other package |
| steps2_4 | list | 2 elements | No other package |
Topics
People (from the free-text Author field)
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CONFESS")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.