flowWorkspace
Bioc currentInfrastructure for representing and interacting with gated and ungated cytometry data sets.
Release Lineage
Entered 2.9 · Nov 1, 2011
Current · Requires R 4.6
Description
This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
594 190 exported
Complexity
2.2 avg / 31 max
Call network
594 nodes / 409 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
23,982
Files
426
Compiled share
13.8%
Has compiled src
Yes
Language breakdown
API
Exported functions
207
Internal functions
193
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.49
testthat edition
–
CI present
Yes
CI type
["github-actions","travis"]
PR gated
Yes
Docs
Roxygen coverage
98.6%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
16.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
2
C++ standard
C++17
License
AGPL-3.0-only
License flags
not SPDX, not OSI
History
Versions
30
First release
2012-01-25
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
49
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 40%
- Documented parameters
- 97%
- Return-value docs
- 44%
- References docs
- 1%
Topics
Depended on by (15)
People
Greg Finak
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("flowWorkspace")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.