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flowBin

Bioc current

Combining multitube flow cytometry data by binning

v1.48.0 · Package record · software · Artistic-2.0

Release Lineage

Entered 2.14 · Apr 14, 2014

Current · Requires R 4.6

1.0 In 25 of 49 releases 3.23

Description

Software to combine flow cytometry data that has been multiplexed into multiple tubes with common markers between them, by establishing common bins across tubes in terms of the common markers, then determining expression within each tube for each bin in terms of the tube-specific markers.

Advisories

None published for Bioconductor

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

11 1 exported

Complexity

3.5 avg / 8 max

Call network

11 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

1,428

Files

38

Compiled share

0%

Has compiled src

No

Language breakdown

R 878 (61.5%)Docs 401 (28.1%)Vignettes 149 (10.4%)

API

Exported functions

2

Internal functions

10

Testing

Has tests

No

Test-to-code ratio

0.00

testthat edition

–

Docs

Roxygen coverage

100%

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

2.10

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

25

First release

2014-04-11

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

–

Dep drift

0

LOC over versions

v2.14: 1,431 LOCv3.0: 1,434 LOCv3.1: 1,434 LOCv3.2: 1,434 LOCv3.3: 1,434 LOCv3.4: 1,428 LOCv3.5: 1,428 LOCv3.6: 1,428 LOCv3.7: 1,428 LOCv3.8: 1,428 LOCv3.9: 1,428 LOCv3.10: 1,428 LOCv3.11: 1,428 LOCv3.12: 1,428 LOCv3.13: 1,428 LOCv3.14: 1,428 LOCv3.15: 1,428 LOCv3.16: 1,428 LOCv3.17: 1,428 LOCv3.18: 1,428 LOCv3.19: 1,428 LOCv3.20: 1,428 LOCv3.21: 1,428 LOCv3.22: 1,428 LOCv3.23: 1,428 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Documentation

In the Bioconductor 3.23 release
READMENoVignettesYes · 1 · dynamicNEWSYes · 0% structuredCitation fileNoWebsitenot declared in DESCRIPTION
Help pages
13
Examples that run
100%7 run in a plain check
Exported functions with examples
100%
Documented parameters
100%
Return-value docs
100%
Help pages citing references
0%
Vignettes (1)

Repository practices

Bioconductor git repository

Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.

No development-tooling practices detected in the Bioconductor git repository.

Datasets

Bundled datasets · 1
NameClassSizeAlso in
aml.sample–––

All of flowBin's data objects

Topics

Maintainer
Kieran O'Neill

Available on

CRANr2uBioconductorautoCRANCOPR

People (from the free-text Author field)

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("flowBin")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

APA

Balamuta, J. J. (2026). R Observatory: Metrics for flowBin version 1.48.0 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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